Engineered Tissue Multiscale Mechanics & Modeling

Year	Item	Publication
2022	36	J.S. Soares, S.K. Saunders, F. Potere, S. Toldo, A. Abbate, Engineered tissue vascular grafts: are we there yet?, Applications in Engineering Science (2022) 12:100114
	35	S.K. Saunders, S.Y. Cole, V. Acuna Sierra, J.H. Bracamonte, S. Toldo, J.S. Soares, Evaluation of perfusion-driven cell seeding of small diameter engineered tissue vascular grafts with a custom-designed seed-and-culture bioreactor, PLoS ONE (2022) 17(6): e0269499
	34	J.H. Bracamonte, S.K. Saunders, J.S. Wilson, U.T. Truong, J.S. Soares, Patient-Specific Inverse Modeling of In Vivo Cardiovascular Mechanics with Medical Image-Derived Kinematics as Input Data: Concepts, Methods, and Applications, Applied Sciences (2022) 12(8):3954
	33	J.H. Bracamonte, J.S. Wilson, J.S. Soares, Quantification of the heterogeneous effect of static and dynamic perivascular structures on patient-specific local aortic wall mechanics using inverse finite element modeling and DENSE MRI, Journal of Biomechanics (2022) 138:111119
2021	32	J.H. Bracamonte, J.S. Wilson, J.S. Soares, Modeling Patient-Specific Periaortic Interactions with Static and Dynamic Structures Using a Moving Heterogeneous Elastic Foundation Boundary Condition, In: Ennis D.B., Perotti L.E., Wang V.Y. (eds) Functional Imaging and Modeling of the Heart. FIMH 2021. Lecture Notes in Computer Science, vol 12738. Springer, pp 315-327.
	31	H. Liu*, J.S. Soares*, J. Walmsley, D.S. Li, S. Raut, R. Avazmohammadi, P. Iaizzo, M. Palmer, J.H. Gorman III, R.C. Gorman, M.S. Sacks, The impact of myocardial compressibility on simulations of pump function in the normal and infarcted heart, Nature Scientific Reports (2021) 11:13466
2020	30	J.H. Bracamonte, J.S. Wilson, J.S. Soares, Assessing Patient-Specific Mechanical Properties of Aortic Wall and Peri-Aortic Structures From In Vivo DENSE Magnetic Resonance Imaging Using an Inverse Finite Element Method and Elastic Foundation Boundary Conditions, Journal of Biomechanical Engineering (2020) 142:121011
	29	R. Avazmohammadi, J.S. Soares, D.S. Li, T. Eperjesi, J. Pilla, R.C. Gorman, M.S. Sacks, On the in vivo systolic compressibility of left ventricular free wall myocardium in the normal and infarcted heart, Journal of Biomechanics (2020) 107:109767
2019	28	R. Avazmohammadi, J.S. Soares, D.S. Li, S.S. Raut, R.C. Gorman, M.S. Sacks, A Contemporary Look at Biomechanical Models of Myocardium, Annual review of biomedical engineering (2019) 21:417-442
	27	R. Avazmohammadi, E. Mediola, J.S. Soares, D.S. Li, Z. Chen, S. Merchant, E. Hsu, P. Vanderslice, R.A.F. Dixon, M.S. Sacks, A Computational Cardiac Model for the Adaptation to Pulmonary Arterial Hypertension in the Rat, Annals of  Biomedical Engineering (2019) 47: 138

Year	Item	Publication
2018	26	R. Avazmohammadi, D.S. Li, T. Leahy, E. Shih, J.S. Soares, R.C. Gorman, M.S. Sacks, An Integrated Inverse Model-Experimental Approach to Determine Soft Tissue Three-Dimensional Strain Energy Density Function Parameters: Application to Post-Infarcted Myocardium, Biomechanics and Modeling in Mechanobiology (2018) 17:31-53
2017	25	J.S. Soares, W. Zhang, M.S. Sacks, A mathematical model for the determination of forming tissue moduli in needled- nonwoven scaffolds, Acta Biomaterialia (2017) 51:220-236.
	24	J.S. Soares, D.S. Li, E. Lai, J.H. Gorman III, R.C. Gorman, M.S. Sacks, Modeling of Myocardium Compressibility and its Impact in Computational Simulations of the Healthy and Infarcted Heart. in: Pop M., Wright G. (eds) Functional Imaging and Modeling of the Heart. FIMH 2017. Lecture Notes in Computer Science, vol 10263. Springer, 2017, pp 493-501.
2016	23	J. Park,* S Choi,* A.H. Janardhan, S.Y. Lee, S. Raut, J.S. Soares, K. Shin, S. Yang, C. Lee, K.W. Kang, H.R. Cho, S.J. Kim, P. Seo, W. Hyun, S. Jung, H.-J. Lee, N. Lee, , S.H. Choi, M.S. Sacks, N. Lu, M.E. Josephson, T. Hyeon, D.H. Kim, H.J. Hwang, Elasto-conductive epicardial mesh for electromechanical cardioplasty, Science Translational Medicine (2016) 8:344ra86.
	22	A. D’Amore,* J.S. Soares,* J.A. Stella, W. Zhang, N.J. Amoroso, J.E. Mayer, Jr., W.R. Wagner, M.S. Sacks, Large strain stimulation enhances extracellular matrix production and stiffness in an elastomeric scaffold model, Journal of Mechanical Behavior of Biological Materials (2016) 8:619-635.
	21	J.S. Soares, K.R. Feaver, W. Zhang, D. Kamensky, A. Aggrawal, M.S. Sacks, Biomechanical behavior of heterograft biomaterials for bioprosthetic heart valves: characterization, simulation, and performance, Cardiovascular Engineering and Technology (2016) 7:309-351.
	20	J.S. Soares, J.E. Moore Jr., Biomechanical challenges to polymeric biodegradable stents, Annals of Biomedical Engineering (2016) 44:560-579.
	19	J.S. Soares, M.S. Sacks, A triphasic constrained mixture model of engineered tissue formation under in vitro dynamic mechanical conditioning, Biomechanics and Modeling in Mechanobiology (2016) 15:293-316.

Year	Item	Publication
2014	18	D. Bluestein, J.S. Soares, P. Zhang, C. Gao, S. Pothapragada, N. Zhang, M. J. Slepian, Y. Deng, Multiscale modeling of flow induced thrombogenicity with dissipative particle dynamics (DPD) and molecular dynamics (MD), ASME Journal of Medical Devices (2014) 7:024502-2
	17	W.C. Chiu, G. Girdhar, M. Xenos, Y. Alemu, J.S. Soares, S. Einav, M.J. Slepian, D. Bluestein, Thromboresistance Comparison of the HeartMate II Ventricular Assist Device (VAD) with the Device Thrombogenicity Emulation (DTE)-Optimized HeartAssist 5 VAD, ASME Journal of Biomechanical Engineering (2014) 136.
2013	16	J.S. Soares, T.L. Bao, F. Sotiropoulos, M.S. Sacks, Modeling the role of oscillatory flow and dynamic mechanical conditioning on dense connective tissue formation in mesenchymal stem cell derived heart valve tissue engineering, ASME Journal of Medical Devices (2013) 7:040927-2.
	15	T.E. Claiborne, M. Xenos, J. Sheriff, W.C. Chiu, J.S. Soares, Y. Alemu, S. Gupta, S. Judex, M.J. Slepian, D. Bluestein, Toward optimization of a novel trileaflet polymeric prosthetic heart valve via device thrombogenicity emulation (DTE), ASAIO Journal (2013) 59:275-283.
	14	J.S. Soares, C. Gao, Y. Alemu, M. Slepian, D. Bluestein, Simulation of platelets suspension flowing through a stenosis model using a dissipative particle dynamics approach, Annals of Biomedical Engineering (2013) 41:2318-2333.
	13	J. Sheriff, J.S. Soares, M. Xenos, J. Jesty, M.J. Slepian, D. Bluestein, Evaluation of shear-induced platelet activation models under constant and dynamic shear stress loading conditions relevant to devices, Annals of Biomedical Engineering (2013) 41:1279-1296.
	12	J.S. Soares, J. Sheriff, D. Bluestein, A novel mathematical model of activation and sensitization of platelets subjected to dynamic stress histories, Biomechanics and Modeling in Mechanobiology (2013) 12:1127-1141.
	11	M.J. Slepian, Y. Alemu, G. Girdhar, J.S. Soares, R. Smith, S. Einav, D. Bluestein, The SynCardiaTM Total Artificial Heart: Review of in vivo, in vitro, and computational modeling studies, Journal of Biomechanics (2013) 46:266-275.

Year	Item	Publication
2012	10	P. Zunino, S. Vesentini, A. Porpora, J.S. Soares, A. Gautieri, A. Redaelli, Multiscale computational analysis of degradable polymers, in: D. Ambrosi, A. Quarteroni, G. Rozza (Eds) Modeling of Physiological Flows, MS&A – Modeling, Simulation and Applications, Vol. 5, Springer, Milano, Italia, 2012, pp. 333-361.
2010	9	J.S. Soares, S. Pasta, D.A. Vorp, J.E. Moore, Jr., Modeling in Cardiovascular Mechanics, International Journal of Engineering Science (2010) 48:1563-1575.
	8	J.S. Soares, J.E. Moore, Jr., K.R. Rajagopal, Modeling of Deformation-Accelerated Breakdown of Polylactic Acid Biodegradable Stents, ASME Journal of Medical Devices (2010) 4:041007-10.
	7	J.E. Moore, Jr., J.S. Soares, K.R. Rajagopal, Biodegradable stents: biomechanical modeling challenges and opportunities, Cardiovascular Engineering Technology (2010) 1:52-65.
	6	J.S. Soares, P. Zunino, A mathematical model for water uptake, degradation, erosion, and drug release from polydisperse polymeric networks, Biomaterials (2010) 31:3032-3042.
	5	J.S. Soares, K.R. Rajagopal, J.E. Moore, Jr., Deformation induced hydrolysis of a degradable polymeric cylindrical annulus, Biomechanics and Modeling in Mechanobiology (2010) 9:177-186.

Year	Item	Publication
2009	4	J.S. Soares, Bioabsorbable polymeric drug-eluting endovascular stents: a clinical review, Minerva Biotecnologica (2009) 21:217-230.
	3	J.S. Soares, Diffusion of a fluid through a spherical elastic solid undergoing large deformations, International Journal of Engineering Science (2009) 47:50-63.
	2	J.S. Soares, J.E. Moore, Jr., K.R Rajagopal, Constitutive Framework for biodegradable polymers with applications to biodegradable stents, ASAIO Journal (2008) 54:(3):295-301.
2007	1	J.S. Soares, J.E. Moore, Jr., K.R. Rajagopal, Theoretical modeling of cyclically loaded biodegradable cylinders, in: F. Mollica, L. Preziosi, K.R. Rajagopal, (Eds), Modeling biological materials, Birkhauser, Boston, 2007, pp. 125-177.